Installation¶

Via Anaconda¶

pixy is currently available for installation on Linux/OSX systems via conda-forge. You can install it using following two conda install commands:

conda install -c conda-forge pixy
conda install -c bioconda htslib

You can test the installation by running:

pixy --help

Note

For information on installing conda:: anaconda (more features and initial modules): https://docs.anaconda.com/anaconda/install/ miniconda (lighter weight): https://docs.conda.io/en/latest/miniconda.html

Alternatively, you can clone from Github, with manual dependency installation: https://github.com/ksamuk/pixy